| Domain |
Archaea
|
| Family |
Thermococcaceae
|
| Species (Full Name) |
Thermococcus sp. (strain GE8)
|
| Gene |
pol pol-1
|
| PFAM codes |
PF00136, PF03104, PF14528, PF14890, PF18714
|
| InterPro codes |
 IPR003586, IPR003587, IPR004042, IPR004860, IPR006133, IPR006134, IPR006141, IPR006142, IPR006172, IPR012337, IPR023211, IPR027434, IPR030934, IPR036397, IPR036844, IPR041005, IPR042087, IPR043502
|
| PDB structures (whole Protein) |
-
|
| Protein name |
DNA polymerase (EC 2.7.7.7) [Cleaved into: Endonuclease PI-TspGE8I (EC 3.1.-.-) (Tsp-GE8 pol-1 intein); Endonuclease PI-TspGE8II (EC 3.1.-.-) (Tsp-GE8 pol-2 intein)]
|
| Global pLDDT |
81.83
|
| Species |
strain GE8
|
| UniProt | |
| Structure Prediction Model |
AlphaFold v4:
 Q9HH84
|
| PDB structures |
-
|
| AlphaKnot |
 Q9HH84 Unknown
|
| Model length |
1699
|
| AlphaFold deposition date |
2022-09-30
|
| AlphaLasso deposition date |
2024-04-14
|
| Bridge type | Deep Lasso pLDDT | Global pLDDT | N-end GLN | C-end GLN | Loop range | Loop Length | N-term crossings | C-term crossings | N-end length | C-end length | Loop area | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
 |
74.45 | 81.83 | 0.117 | -1.35 | 428-442 | 15 | -579 |
427 | 1257 | 135 | ||||||
Model Sequence |
MILDTDYITEDGKPVIRVFKKENGEFKIEYDRNFEPYFYALLKDDSAIEEVKKITAKRHGTVVKVKRAEKVKKKFLGRPIEVWKLYFTHPQDVPAIRDKIREHPAVIDIYEYDIPFAKRYLIDKGLIPMEGDEKLKMLAFDIETLYHEGEEFAEGPILMISYADEEGARVITWKKVDLPYVDVVSTEKEMIKRFLRVVKEKDPDVLITYNGDNFDFAYLKRRSEKLGVKFILGRDGSEPKIQRMGDRFAVEVKGRIHFDLYPVIRRTINLPTYTLEAVYEAIFGKPKEKVYAEEIATAWETGEGLERVARYSMEDAKVTFELGKEFFPMEAQLSRLIGQSLWDVSRSSTGNLVEWFLLRKAYERNELAPNKPDERELARRRQSYAGGYVKEPERGLWNNIVYLDFRSLYPSIIITHNVSPDTLNREGCKEYDVAPQVGHKFCKDFPGFIPSLLGDLLEERQKIKRKMRATIDPVEKKLLDYRQRAIKILANSILPDEWLPLLVNGRLKLVRIGDFVDNTMKKGQPLENDGTEVLEVSGIEAISFNRKTKIAEIKPVKALIRHRYRGKVYDIKLSSGRNIKVTEGHSLFAFRDGELVEVTGGEIKPGDFIAVPRRVNLPERHERINLIEILLGLPPEETSDIVLTIPVKGRKNFFKGMLRTLRWIFEEEQRPRTARRYLEHLQKLGYVKLMKRAYEIVNKEALRNYRKLYEVLAERVKYNGNKREYLVHFNDLRNEIKFMPDEELEEWKVGTLNGFRMEPFIEVGEDFAKLLGYYVSEGYARKQRNQKNGWSYSVKIYNNDQRVLDDMEKLASKFFGRVRRGKNYVEISRKMAYVLFESLCGTLAENKRVPEVIFTSPESVRWAFFEGYFIGDGDLHPSKRVRLSTKSEELVNGLVVLLNSLGISAIKIRFDSGVYRVLVNEELPFLGNRKRKNAYYSHVIPKEILEETFGKQFQKNMSPAKLNEKVEKGELDAGKARRIAWLLEGDIVLDRVEKVTVEDYEGYVYDLSVEENENFLAGFGMLYAHNSYYGYYGYAKARWYCRECAESVTAWGRSYIETTIREIEEKFGFKVLYADSVAGNTEVIIRRNGKVEFVPIEKLFQRVDYRIGEKEYCALEGVEALTLDNRGRLVWRKVPYIMRHKTNKKIYRVWFTNSWYLDVTEDHSLIGYLNTSKVKSEKPLKERLVEVKPRELGEKVKSLITLNRAIARSIKANPIAVRLWELIGLLVGDGNWGGHSKWAKYYVGLSCGLDKAEIEEKVLRPLKEAGIISNYYGKSKKGDVSILSKWLAGFMVKYFKDENGNKRIPSFMFNLPREYIEAFLRGLFSADGTVSLRRGIPEIRLTSVNRELSNEVRKLLWLVGVSNSMFTETTPNKYLGNESGTRSIHVRIKNKHRFAKRIGFLLDRKATKLSDNLREHTNKKMAYRYDFDLVYPKKIEEINYDRYVYDIEVEGTHRFFANGILVHNTDGFFATIPGADAETVKKKAMEFLKYINAKLPGLLELEYEGFYVRGFFVTKKKYAVIDEEGKITTRGLEIVRRDWSEIAKETQARVLEAILKHGDVEEAVRIVKEVTEKLSKYEVPPEKLVIHEQITRDLKDYKATGPHVAVAKRLAARGIKIRPGTVISYIVLKGSGRIGDRAIPFDEFDPAKHKYDAEYYIENQVLPAVERILRAFGYRKEDLRYQKTKQVGLGAWLKVKGKK
|
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Q9HH84